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### Working with FASTQC
In this assignment, you should gain a greater understanding of how sequence data is stored/formatted and how we assess the quality of our data.
## Learning Goals
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See: https://multiqc.info/docs/reports/customisation/#running-modules-multiple-times
Need trimmed and untrimmed fastqc result to show up in separate sections
![image](https://github.com/OpenOmic…
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https://github.com/clinical-genomics-uppsala/Twist_DNA/blob/8a1d086f244ed17e4b638bd54bd42a92513b729a/src/Snakemake/rules/QC/fastqc.smk#L38-L39
https://github.com/clinical-genomics-uppsala/Twist_DNA…
Smeds updated
3 years ago
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### Description of the bug
- If there are two FastQC sections displaying the read stats before/after preprocessing, then why are there six samples in each FastQC diagram? I'm expecting 3 samples, a…
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for showing the FastQC output. Perhaps with arrows showing particular parts of the output graphs.
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Hi,
Always got the following errors when trying to run on *.fq.gtz files:
> "ERROR:Error: test.1.fq.gtz format error!(magic num error)
> Started analysis of test.1.fq.gtz
> Please waiting...
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Update [fastqc_per_base_sequence_quality_dropoff.py](https://github.com/aomlomics/tourmaline/blob/develop/scripts/fastqc_per_base_sequence_quality_dropoff.py) to work with fastq_summary.qzv output
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Hi Felix,
I am sorry to trouble you. I’m having some trouble with the FastQC report and would like to ask you.
1. According to the “Per base sequence content”, should I clip the first 6 bp for go…
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We've done quite well at cutting down the compute demands of the pipeline, but there are still several steps that are limiting on runtime (e.g. [1](https://github.com/naobservatory/mgs-workflow/issues…
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## New feature
Pinging @rsuchecki @pditommaso (I couldn't find an issue with this, I hope it's okay that I open a new one).
Based on a small conversation on the Gitter ([1 - primary](https://gi…