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- [ ] speed up addReadStats (big difference in the time between the different statistics - which ones should be calculated by default?)
- [ ] speed up filterReads (it's fine for small-ish sets of rea…
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Hi,
I'm running 3 genomes through bacLIFE but keep getting this error, and te pipeline crashes:
RuleException:
CalledProcessError in file /mnt/LargeStorageNoBackup/Datasets/Moshea/bacLIFE/Snake…
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I want to add `clusty` to `conda-forge` as an independent package, as it can be very useful for general-purpose clustering. However, I'm getting this error when trying to compile on macOS:
```
cla…
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I have run dpclust with pairs of whole genome samples for each patient, comparing the clones between a primary tumour and a metastatic tumour for each patient. The clustering works for all the patient…
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Hello group!
I met a problem when I run
```
rsem-generate-ngvector ${REF} ${ROAD}/genome/wheat_ref
rsem-for-ebseq-calculate-clustering-info 25 /storage/yifang/20190405_RNAseq/data/rsem/genome/w…
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**Describe the issue**
Trying to run the LTR Pipeline alone to add to some libraries and then re-mask some genomes. So far, this is only happening with one genome. I use the -LTRStruc flag for Repe…
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When trying to figure out how to document metabarcoding data, I came across some things that were not super clear to me.
Any insight in this question is much appreciated, and perhaps the terms could …
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The reason why I'm asking is because VirFinder, geNomad, VirSorter(2), etc. operate on individual contigs then those results are usually fed into CheckV to determine how complete/contaminated the viru…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/hyochoi/ELViS
Confirm the following by editing ea…
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Hello, cytham
Thanks for providing such a nice tool. I encounted a error when I test a small sample with Nanovar 1.7.0. My commadline is "nanovar -x pacbio-ccs -f hg38 demo.sort.bam ~/ref_genome/hg…