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it would seem to make sense to have the sgc queries be done on pangenomes at the species or genus level, rather than individual genomes.
we could accomplish this by grouping the gathered genome wit…
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I'm running version: v1.1.1 . This is issue is an extension of https://github.com/medema-group/bigslice/issues/66
```
(VEBA-biosynthetic_env) [jespinoz@exp-15-15 Test]$ bigslice --query test_outp…
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Hello,I have encountered an issue when running AlleleCall to the genomes. It said "AttributeError: 'NoneType' object has no attribute 'seq'", what's the matter, thank you!
$ chewBBACA.py AlleleCall…
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Dear @alekseyzimin
I wrote a few days ago in a closed issue and I wonder if you could not read it [https://github.com/alekseyzimin/masurca/issues/47](url).
I also checked genome.scf, genome.ctg a…
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To do:
- [x] send settings to back-end in a dictionary-like way
- [x] in the pop-up, replace
- [x] "Seed scores" with "Seed scores and complements"
- [x] "Manta" with "Network clustering"
…
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Hi Dr. Olm,
I am using version 2.6.2, when running dRep compare with --S_algorithm fastANI, there is an error:
Clustering Step 1. Parse Arguments
Clustering Step 2. Perform MASH (primary) clus…
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Thank you for making this tool available, we have previously used it to curate TE's for one of our species of interest and is has worked great. However, we are now attempting to use it for another spe…
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_From [hoffman...@gmail.com](https://code.google.com/u/112579936970974005212/) on November 14, 2009 13:35:26_
This is part of the nativeSpecification for each clustering system.
_Original issue: htt…
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Hi Roth,
Thanks for your nice presentation last week on Pangenome analysis. I am wondering how CDHIT performs when there are a lot of genomes to compare. As you might know, uclust (embedded in usear…
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When trying to figure out how to document metabarcoding data, I came across some things that were not super clear to me.
Any insight in this question is much appreciated, and perhaps the terms could …