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cytham
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nanovar
Structural variant caller for low-depth long-read sequencing data
GNU General Public License v3.0
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ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
#90
lovelycatZ
opened
1 month ago
9
bedtools getfasta error
#89
C-YONG
opened
1 month ago
13
Bam input - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb8 in position 4: invalid start byte
#88
Jyoti-Mridha
opened
2 months ago
3
Add alt seq and cram support
#87
cytham
closed
3 months ago
0
Add alt seq and cram support
#86
cytham
closed
3 months ago
0
Upgrade to v1.6.2
#85
benoukraflab
closed
4 months ago
0
Upgrade to v1.6.2
#84
benoukraflab
closed
4 months ago
0
Upgrade to v1.6.2
#83
AsmaaSamyMohamedMahmoud
closed
4 months ago
0
V1.6.2
#82
cytham
closed
4 months ago
0
Alternative sequence in VCF
#81
jiadong324
opened
4 months ago
5
Bump pillow from 10.2.0 to 10.3.0
#80
dependabot[bot]
opened
5 months ago
0
v1.6.1 - restrict tf<=2.15.1
#79
cytham
closed
5 months ago
0
tensorflow 2.16 incompatibility
#78
cytham
closed
5 months ago
0
Nanovar crashes with "ValueError: Exception encountered when calling Sequential.call()"
#77
scharf-f
closed
5 months ago
2
update conda version
#76
bwlang
closed
7 months ago
2
Not finding 4kb deletion
#75
ccbruels
closed
7 months ago
3
v1.6.0
#74
cytham
closed
7 months ago
0
Bump fonttools from 4.42.1 to 4.43.0
#73
dependabot[bot]
closed
7 months ago
1
Specifying specific regions to INCLUDE when variant calling (done adaptive sampling for nanopore sequencing)
#72
nbertholdpgc
opened
8 months ago
1
IndexError : list index out of range
#71
skeremaydin
closed
8 months ago
6
Removed maxovl filter
#70
cytham
closed
9 months ago
0
Fix cytocad import bug
#69
cytham
closed
10 months ago
0
cytocad is not listed as a dependency for nanovar:1.5.0
#68
GallVp
closed
7 months ago
5
module 'numpy' has no attribute 'object'.
#67
GallVp
closed
10 months ago
6
Bump werkzeug from 2.3.7 to 3.0.1
#66
dependabot[bot]
closed
10 months ago
0
Bump urllib3 from 1.26.16 to 1.26.18
#65
dependabot[bot]
closed
10 months ago
0
Bump pillow from 10.0.0 to 10.0.1
#64
dependabot[bot]
closed
10 months ago
0
Bump urllib3 from 1.26.16 to 1.26.17
#63
dependabot[bot]
closed
10 months ago
1
Workflow failing due to makeblastdb and hs-blastn
#62
lisosome
closed
1 year ago
2
AttributeError: module 'numpy' has no attribute 'typeDict' (deprecation expired in numpy version 1.24)
#61
jamesdalg
closed
8 months ago
3
cram file support
#60
kcleal
opened
1 year ago
1
interpreting output (SVLEN)
#59
rmormando
closed
1 year ago
2
Error: windowmasker obinary failed
#58
adbeggs
closed
1 year ago
1
Bump werkzeug from 2.0.1 to 2.2.3
#57
dependabot[bot]
closed
12 months ago
1
Bump oauthlib from 3.1.1 to 3.2.2
#56
dependabot[bot]
closed
12 months ago
1
TypeError: Error: Genome filter BED contig id not found in reference at line 1
#55
egnst
closed
1 year ago
6
Bump certifi from 2021.5.30 to 2022.12.7
#54
dependabot[bot]
closed
12 months ago
1
Bump pillow from 8.3.2 to 9.3.0
#53
dependabot[bot]
closed
12 months ago
1
Bump tensorflow-cpu from 2.6.0 to 2.9.3
#52
dependabot[bot]
closed
12 months ago
1
Bump protobuf from 3.17.3 to 3.18.3
#51
dependabot[bot]
closed
12 months ago
1
Bump oauthlib from 3.1.1 to 3.2.1
#50
dependabot[bot]
closed
1 year ago
1
HTML Report Figure's Aren't Showing
#49
Mrromeros
closed
1 year ago
4
can nanovar work on incomplete genomes?
#48
yekaizhou
closed
2 years ago
4
Bump numpy from 1.19.5 to 1.22.0
#47
dependabot[bot]
closed
12 months ago
1
Bump tensorflow-cpu from 2.6.0 to 2.7.2
#46
dependabot[bot]
closed
1 year ago
1
Bump tensorflow-cpu from 2.6.0 to 2.6.4
#45
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.3.2 to 9.0.1
#44
dependabot[bot]
closed
1 year ago
1
Unable to install using conda
#43
beantkapoor786
closed
2 years ago
4
Bump tensorflow-cpu from 2.6.0 to 2.6.3
#42
dependabot[bot]
closed
2 years ago
1
Error: Unrecognized CIGAR translated symbol "3"
#41
infotmatician
closed
2 years ago
2
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