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Expected Behavior
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This request to add new genotype facilities comes from blueberry breeders at NCSU.
These are the name…
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Follow on from
https://github.com/pombase/website/issues/1916
The 'allele comment' is a fairly recent thing., Historically we put "allele comments' in the genotype comments field. I suspect 99.9%…
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Expected Behavior
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add a linking table to phenome schema with the following structure:
table name: allele_marker
colu…
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Hi,
Thanks for a great tool. I am playing around with genotyping amplicon data from Nanopore sequencing. I can get Straglr to call certain STRs but not others, and I wonder if I need to do somethin…
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Hi,
I performed the workflow on multiple mixed samples, retrieving correctly the different genotypes, per sample.
I was wondering what you can suggest to compare the different mixed samples, that sh…
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Hello --
Thank you for developing and maintaining a powerful resource for the genomics community.
I've genotyped SVs for a species of bird, and noticed there was an aberrantly large inversion t…
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Start time is 2024/06/12--12:53
KING 2.2 - (c) 2010-2019 Wei-Min Chen
The following parameters are in effect:
Binary File : /xxx/rare_variant/GRM/chrall.2082.mac1.filt.mind.gen…
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# Dengue virus DENVx genotypes
An update regarding the classification of dengue virus (DENV) genotypes. As suggested by @rneher in a [Slack channel](https://bedfordlab.slack.com/archives/CM3QYTQ10/…
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Hi I'm Erick,
I've been using Garlic with only tped and tfam files, I'm trying to include the tgls file, but something that is not clear for me is the likelihood value format. I'm trying with the f…
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Create an ingest for ZDB-FISH genotypes to ZP phenotypes
This ingest hasn't been created yet, so it will need to be started with:
```
cruft create https://github.com/monarch-initiative/cookiec…