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The string optional field (type tag `Z`) is defined to conform to the regex `[ !-~]+`. However, in the SAM specs, it should conform to `[ !-~]*`. I.e. an empty string is allowed in SAM files but not i…
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The vg version I use: version :
v1.59.0
I used PGGB to construct a pan-genome (GFA); I want to rely on him to find the SNP of the sample; Here's my current script:
vg autoindex -t …
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Hi OPERA-MS developer,
I would like to ask where I could find the assembly graph. I searched subdirectories in the output folder, but didn't find any gfa or fastg files. It looks like it was genera…
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As suggested by @heuermh during the BOSC 2021 CoFest - thank you!
- rGFA https://github.com/lh3/gfatools/blob/master/doc/rGFA.md#the-reference-gfa-rgfa-format
- GFA 1.0 http://gfa-spec.github.io/G…
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**Is your feature request related to a problem? Please describe.**
Currently, phables takes assembly graph files only in `gfa` format.
**Describe the solution you'd like**
Add a converting step i…
Vini2 updated
5 months ago
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Hi,
Do you have any plans to produce a GFA output instead of a Fasta? it would be a natural way to represent the full graph with adjacency information betw unitigs
Thanks
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Hello, I'm look into the meaning of the columns of the lines in GFA files. Although I've checked the links you recommended, such as https://hifiasm.readthedocs.io/en/latest/interpreting-output.html an…
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Hello,
My input file is the result of `minigraph` , the ekg recommend [https://github.com/vgteam/vg/issues/3129#issuecomment-746383277](url) your `gfautil` to convert the format, but when I run t…
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### Your name
Lixu Jin
### Your affiliation
University of Montana
### Provide a clear and concise overview of the new feature requested.
Current HEMCO treats injection height in the sam…
jinlx updated
2 months ago
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Instead, I think this is in ASCII format and should therefor have the ending .LST.