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With #754 we're halfway to also supporting inframe indels so we should just do the rest of the work necessary to support those types of proximal variants.
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I am interested in the colibactin motif to see whether a mutation is likely be related to colibactin. In the original article, there was a clear notice of what an single base substitution colibactin-m…
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I am using the example data contained in the package. It fails.
```r
> test
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I used the strelka to identify germline and somatic mutation for a tumor sample. The StrelkaGermlineWorkflow runs normally, but StrelkaSomaticWorkflowruns an error. The version of strelka is 2.9.10.
…
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Hi Walaj,
I tried to use SvABA on long deletion range from 1mbp to 150mbp in simulated bam file. SvABA works well when only small indel are included. However, when I start to include those long d…
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Hello. I am currently analyzing the SNVs for 400+ fungal genomes for pangenomic analysis.
I was just wondering if the indel information for the multiple sequence alignment is stored in the outputted …
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Hello,
I have a question regarding the use of normal samples in ScanNeo2.
According to the information provided in the data section of the wiki, it states:
"In addition, normal allows to specif…
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Hi,
I have two sumstats, before doing genetic correlation, I have intersected the SNPs of the two data and generated the sumstats.gz files. When I do rg, it reports this error:
./ldsc.py \
--ref-…
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I am trying to use the chromoscope package in Jupyter Notebook to load my data and use the genome view. However the view is not loading and the genome is not displayed. Please see my notebook below: …