-
transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1653
![image](https://github.com/user-attachments/assets/d2a20d2c-531c-4dc8-bd3b-9df2b31961bc)
tree: https://nextstr…
-
-
This was spotted first by @xz-keg in the groups and then tracked as Branch 30 of #1771
it is defined by three spike mutations 186L,445R and 493E
The tree has now changed and it appears to be a lin…
-
I hoped that passing `--output-multifurcating-tree` for cmaple mode would results in a multifurcating tree, in the way that `--polytomy` does for normal iqtree mode, but apparently it's not working fo…
-
Hello and thanks for the great package.
I am producing a heat tree matrix of differential relative abundances in fungal taxa. I would like to display differences in taxa down to the order rank, how…
-
## New lineage proposal
by
### Description
Sub-lineage of:
Earliest sequence:
Most recent sequence:
Countries circulating:
### Genomes
### Evidence
### Proposed lineage …
-
From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1995
There is a Orf1a:N470T sub-branch of KS.1.1 that most of the seqs are placed elsewhere by usher. Now that branch has a S:R1…
-
# List of expected functions from [`molevol_scripts/R`](https://github.com/JRaviLab/molevol_scripts/tree/main/R)
Ensure all functions are present and accounted for. Use list depth to determine if f…
-
S:A435S is one of the few convergent RBD mutations appearing after FLirt/FViRT and 493E , together with 478X and 445X
And the still undesignated MC.10 branch appears to be fast and to be not far f…
-
By Rede Genômica Fiocruz
Description:
We found a highly supported (aLRT = 93) clade within lineage XBB.1.18.1 (n = 83) harboring mutations S:F456L and NSP3:S1007N, mostly from Brazil (n = 77, 93…