-
Hello, I am trying to use dechat to correct ont R10.4.1 SUP reads (a mixture of N50=18kb of ~130Gb and N50=80kb ultra long of ~30Gb).
The program produces about 95Gb of recorrected.fa, then threw an …
melop updated
1 month ago
-
Hi,
I am trying some presumably accurate Nanopore reads that I have error-corrected (see https://gist.github.com/jelber2/f22c24442c34f872d8ebf073ad721476?permalink_comment_id=5058115#gistcomment-505…
-
Hi, I finished an assembly and the result is:
Type Length (bp) Count (#)
N10 22880485 3
N20 10335838 10
N30 …
cj2jy updated
3 months ago
-
Hi again,
I noticed that since upgrading to the v5 model, I have a lot more megabase-size reads in ULK114 data than with v4 models, albeit most of them seem to have low qualities of Q5-Q10. To put …
-
## Guidelines
Please note that GitHub issues are only meant for bug reports/feature requests. If you have questions on how to use APOC, please ask on [the Neo4j Discussion Forum](https://community.…
-
Hi,
I'm running `assemble` using this command line:
```
assemble -m hic_corrected.h5 -o ./assembly_output \
--min_scaffold_length 100000 --bin_size 5000 --misassembly_zscore_th…
-
Dear all,
I obtained CNV results using nanopore reads (cov : ~50x, N50 : ~40kb).
However, there was big difference between results of qdnaseq and spectre as shown below.
qdnaseq : 4 CNVs
spectre…
-
I am curious as to the way Blobtools2 calculates N50? For the exact same dataset I get an N50 of 706kb with Quast and an N50 of 710kb from Blobtools2 (via snailplot). I am not overly concerned with a …
-
Hi,I want to know the reason for the low N50.Is one of this:
1、low read depth, and what is the minimum read depth to extend one contig?
2、if a het area can affect contig extend?
3、if a repeat area …
-
Hello,
I have been running some tests with NextDenovo 2.2 on one genome for which I have high coverages of PacBio and Nanopore reads. For both datasets separately, I tried subsampling the reads to …