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Hi!
Thanks for sharing. I am trying to train the model on a dataset with only one nuclei type. If I set the num_nuclei_classes =2, does the branch for nuclei type prediction get constructed? I will…
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Hi there,
I've been using the plugging previously with no problem. Things has been fine until recently I run into a problem of Part 2 . The interface keep showing up an error of "macro error no summ…
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When executing the python code:
`model = fast.DataHub().download('nuclei-segmentation-model')`
I get the error:
`Traceback (most recent call last):
File "C:\Users\etiennp\PycharmProjects\RACE\…
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Hi,
I specified `segmented_custom` in the following code
```
sq.im.segment(img=img2, layer="image_smooth", channel=None, method=cellpose_he, channel_cellpose=0, flow_threshold=1)
…
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Hi,
I am getting an error during the model.train() step and have no idea what could be going wrong. Here is the full error:
```
2024-06-12 22:47:29,009 INFO Initialising model
Number of genes: 2…
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**Update**: I created a table to keep track of datasets. It's available [here](https://docs.google.com/spreadsheets/d/1PnATNLBFIilLSYlriOtQuYzXUXB9EEcoaFH0l9wv9ls/edit?usp=sharing).
- [aiSEGCell](h…
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Hi
I am trying to use MONAI Model Zoo Discussion - pathology_nuclei_segmentation_classification model on QuPath with Monai Label extension. When I press Annotations button after completion of proc…
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To get the correct segmentation it's important that the objects on the new image are approximately the same size as in the training data. This doesn't necessarily mean that the voxel size should be th…
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Hi,
I am using Mesmer to segment cell nuclei of multiplexed immunofluorescence images.
To check if the segmentation works well, is it possible to obtain the segmentation outlines overlaid on the c…
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E.g. After GASP, the "Run Segmentation Fix from Nuclei" widget doesn't find the immediate GASP output in the drop down list. But if I GASP again, the previous renamed GASP output shows up.