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https://github.com/ome/bioformats/pull/4234 highlights that there can be cases where memo file loading breaks in a way that our current tests do not catch. Catching these issues by eye in code review …
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- **Issue**: Trying to drag-n-drop Iterseg-written labels files (from segment_data widget) into napari using the iterseg reader fails.
- **Error trace**: Traceback begins with `MultipleReaderError` …
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First, Thanks for the good work!
When test your model on my own czi file, I have to extract tif file from it and run the inference,
However, I find that the extracted files fail to pass to the PIL…
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Hi @haesleinhuepf
In terms of test cases:
- opening ome tiff files
- computing histogram of image intensities
- fft or fourier transform
- operations involving processing shapely polygons
…
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Sorry for the continuous questions, and I'm really at the beginning stage of spatial transcriptomics.
I aligned my confocal image (Z-stack OME TIFF file) with the Xenium dataset in Xenium Explorer.…
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Issue was raised in forum thread https://forum.image.sc/t/how-to-open-video-in-matlab-using-bioformats-plugin-when-the-source-data-is-split-into-multiple-tif-files/99909/6
Sample files reproducing …
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This request comes from forum thread https://forum.image.sc/t/saving-tiff-using-bioformats/34932/2
For OME-TIFF physical size is populated for X, Y, Z. However for standard TIFF it is only availabl…
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Passing `mode=w` to `parse_url` does not truncate existing files as it should.
Minimal example:
```python
import numpy as np
import ome_zarr.writer
import zarr
file_path = "my.ome.zarr"
loc =…
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I am trying to stitch a large image of a Mouse Whole Brain of a single channel without autofluorescence, acquired by a LSFM, using the ClearMap GUI.
I have raw tile files already converted to .npy, w…
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Reported in https://forum.image.sc/t/issues-mrxs-to-tiff-using-bioformat2raw/100695; private sample data is in `automated-tests/inbox/imagesc-100695/`.
The problematic dataset has an extra `Slide z…