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Hi,
I was wondering whether there is a function inside vegan for calculating the Gini coefficient, as this is another diversity metric that is used a lot for TCR/BCR repertoire analysis?
Many th…
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Hi all,
Thanks for developing this very interesting and useful package.
Am I correct in assuming there is no compatibility with demultiplexing cell hash data with TCR repertoire analysis (10x) …
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### Describe the feature
I recently read a chessbook that had a pretty great coding for variations:
The idea, however unusual, is very pleasant to read ; therefore I'd recommend some sort of …
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- [ ] What types of knowledge and/or algorithms do we want to compute?
- [ ] specificity prediction algorithms
- [ ] gather comprehensive list of existing tools
- [ ] which algorithms will require cod…
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Closely related to #201, obviously, but I'm actually more thinking about #317 and efforts to simplify the `Clone` schema. For #201, all `Rearrangement`s/`Cell`s in a `Repertoire` would be nonphysical,…
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Another form of sequence analysis is doing immune repertoire sequencing of the [VDJ recombination](https://en.wikipedia.org/wiki/V(D)J_recombination) locus in B and T cells.
For captured/enriched …
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[Cukalac T, Kan WT, Dash P, Guan J, Quinn KM, Gras S, Thomas PG, La Gruta NL. Paired TCRαβ analysis of virus-specific CD8(+) T cells exposes diversity in a previously defined 'narrow' repertoire. Immu…
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> I can tell you what are the useful functions I use, as well as pretty much every chess pro out there
> 1. Going through recent games from big events - chessbase has a reasonable but not perfectly u…
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Bonjour,
(Merci pour l'outil déjà, super utile !)
J'utilise l'outil pour une étude sur la responsabilité numérique des musées (https://musees-responsables.karl-pineau.fr/)
Mais l'export XLS est…
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## 🚀 Feature
Allow plotting of "clonal trees" for bcell data, rooted on the germline.
## Motivation
B-cell repertoires are interesting because of SHM - you can group together different clonot…