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build a manifest containing zip files with `sig collect`:
```
sourmash sig collect podar-ref/1.fa.sig.zip -o manifest-with-zipfiles.csv -F csv
```
try to run manysearch on it:
```
sourmash scr…
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I noticed some occasional messages while running version 0.2.2 that loads inbetween `Starting accession #/# (%)`, such as:
1. `Error: Failed to send request`
2. `Error: Invalid checksum line forma…
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this could be a good & substantive next step towards higher-level oxidation of sourmash internals - what if we added a `load_from` plugin entry point to branchwater that loaded zip files, and supporte…
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the betterplot plugin (#3178 and https://github.com/sourmash-bio/sourmash_plugin_betterplot/) provides some nice additional visualization capabilities to sourmash. We should advertise those on the mai…
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**10 threads were used for 0.2.0+ (prior versions could not use multithreading)** However, given the 3 simultaneous download limit, I doubt we're effectively using more than 3 threads.
> 49, 24…
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Hello! Hope you are doing well. I would like to try out `manysketch` for different protein moltypes. I see that the new `gather`, `search`, `index` and `check` [commands](https://github.com/sourmash-b…
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Trying to run fastmultigather against a rocksdb in
`/group/ctbrowngrp2/scratch/annie/2023-swine-sra/sourmash/viral_taxonomy/genbank/sc100rocksdb`
When running against .zip db, command works and I…
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This example uses the metagenome signature prepared in https://github.com/sourmash-bio/sourmash-examples/issues/12.
You'll also need to download the GTDB database as in https://github.com/sourm…
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Currently, the `dereplicate-mags` action needs a distance matrix to use when dereplicating, but there is no action available in the environment to generate one from `SampleData[MAGs]`. Thus everything…
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### Description of feature
Example workflow: https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/