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only the tools deemed essential from #40 for 1.0.0 release, as all of them is a little bit to much:
- [x] BLAST | YES
- [x] IntaRNA | YES
- [x] TargetP | NO
- [x] TMHMM | NO
- [ ] SRAToolkit |…
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I use SRAtoolkit from NCBI to convert a RUN SAR14514455 to fastq file as below:
Then…
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Hello,
I'm going to download the cf-mRNAseq data and try to map it using STAR. But all the files come out as zero.
Attach log.out and log.out.final.
Below is the code I use.
When I checked t…
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Hello,
I'm validating software tools for missing dynamic libraries. I do this on CentOS 7.9 and Rocky 8.8. Doing so, I noticed that `dump-ref-fasta` that comes with relies on a glibc version that…
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まず、このシェルスクリプトの中身は最新バージョンに書き換えました、
3行目 fdump=sratoolkit.2.10.7-mac64/bin/fastq-dump
その上で実行したのですが、
This sra toolkit installation has not been configured.
Before continuing, please run: vdb-config …
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files listed in NA12878/sequence.index.NA12878_PacBio_MtSinai_NIST_hdf5_08182015
e.g. http://sra-download.ncbi.nlm.nih.gov/srapub_files/SRR1491459_SRR1491459_hdf5.tgz
return 404 when attempting …
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Bien, pero puedes mejorarlo.
En el listado de avances del repo de la clase te faltó poner https://github.com/almamelisa/ProyectoFinalBioinfo-2018-II/blob/master/Avance_3.md entre paréntesis, por fa…
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2. RNA-seqデータダウンロードの通りに進めていたのですが，fasterq-dumpのエラーか，一部ファイルのダウンロードができませんでした．
Sratoolkitのprefetchを使って，fasterq-dumpをしたところうまく行きました．
#うまくいったファイルのアウトプット
```
spots read : 7,872,484
reads read …
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### Publication and Data Information
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA516042
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/mestato/stat…
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When ran doctor.py I got fastq-dump error, below.
doctor.py
# Doctor! Doctor! Give me the news.
# Checking symptoms ...
# bwa ... OK
# datamash ... OK
# fastqc -h ... OK
# …