-
Hello,
I'm using vsearch sintax to assign sequences taxonomically. One of the reference databases I'm using does not contain the domain rank for references, just the phylum rank and upwards. I've b…
-
Hi Ben,
I am running `microbial_fraction` with few metagenomes and it is great. I was thinking that it should be possible to include the weighted standard deviation of the average genome size in the …
-
See https://forum.inaturalist.org/t/improve-wording-of-ids-created-by-taxon-changes/3705
Currently if a user adds an ID and that ID's taxon gets updated by a taxon change, iNaturalist says "[userna…
-
It looks like there are several matches: https://www.checklistbank.org/dataset/304862/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nomCode&facet=nameType&facet=field&facet=authorshi…
-
I'm the maintainer of the `rredlist` package, and I wanted to make you aware that the next version of the `rredlist` package will break the IUCN functions in the `taxize` package. This is due to major…
-
Should expand these terms to enable reporting of the recovery of other taxonomic marker genes, not just 16S?
## Current term details of 16S recovered [[MIXS:0000065](https://genomicsstandardsconsor…
-
Hello,
I am using kraken2 to assign sedaDNA reads to a custom database (made of mitochondrion and chloroplast genomes).
I had to redo some sequencing and my project quite go running through time w…
-
```
{
"count": 2075,
"verbatim_taxonID": "null",
"verbatim_taxonConceptID": "null",
"verbatim_scientificNameID": "null",
"verbatim_kingdom": "null",
"verbatim_phylum": "null",
"v…
-
Dataset link: https://mammaldiversity.org
Region: Global
Taxon: Mammalia
Type: checklist
Priority: medium
License: CC BY 4.0
Comments: Expert-based, open licensing. Another one for y…
-
as proposed by @ajacsherman
please provide example