-
Hello-
I am interested in deploying qmotif to quantify telomeres however I have HG38 aligned bams, is it possible to just liftover the coordinates you provided in the configureration file to hg38 …
-
Add as we come across them:
tidk
alans script
alans script, expanded to larger section of genomic sequence
university group
-
Hi,
Recently I used TelSeq to estimate telomere length from WGS sequencing data (NovaSeq), with k = 7 and r = 151. The returned length falls in the range of 0.4 - 0.5kb. However for a different batch…
-
### Description of feature
Issue brought up by TreeValGal paper - rightfully so in this case
```
bin/juicer_tools.1.8.9_jcuda.0.8.jar: Java archive data (JAR)
bin/telomere.jar: …
-
How would telomerecat handle cases where a broken chromosome is stabilised by the _de novo_ gain of telomeres? Reads from newly formed 'sub-telomeric' regions ought to map within the original referenc…
-
http://www.nejm.org/doi/full/10.1056/NEJMoa1515319
This item should be annotated.
-
I am writing to seek guidance regarding the quantification of telomeres using qmotif. Despite successfully deploying qmotif for telomere quantification with an HG38-aligned BAM file and obtaining the…
-
We aim to create the `.mu` and `.UD` resource files, which are auxiliary files for the SVDPrefix, using the CHM13 variant call format files (VCFs) available at [this link](https://s3-us-west-2.amazona…
-
Hi :)
I have used the following command:
`seqtk telo assembly.fa > telo.bed 2 > telo.count`
I instantly get two files: telo.bed (**empty**) and telo.count which shows me the following:
`more tel…
-
The telemore sequences were removed after Nextpolish