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Hello, I am using tepid for the mutation analysis of transposable elements. When I did the first mapping, there was no problem; I got four files bam, bai, split.bam and umap.fastq; I was using the fir…
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Hello, Professor Ou.
Recently, I have been using EDTA to annotate transposable elements (TEs) in multiple animal genomes. However, while some genomes can generate the .mod.EDTA.TEanno.sum file, oth…
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**1. Suppl Figure 1**
- [x] A. FACS plots of PND8 and PND15 spermatogonia isolation (Irina)
- [x] B. Immunocytochemistry (ICC) of sorted vs unsorted spermatogonia population (Irina)
- [x] C. …
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Hello,
Thank you so much for developing HiC-Pro. It is a very nice tool to process Hi-C data. However, I think that there may be some limitations for analyzing the Hi-C data of organisms that consi…
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It would be a nice feature to draw the structural features of transposable elements such as TIRs (Terminal invertead repeats), LTRs (Long Terminal Repeats), and TE related genes (polyproteins) in jBro…
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I want to know the WEB site to install NINJA and ABBLAST.
I tried RepeatModeler2 repeatedly but always made a lot of mistakes.
I always can't get a masked genome sequence at last. I know this error …
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Here is a personalized video review
https://uw.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3692c33-b29b-44d9-ac2b-ac1540b518f1
1) The next step is to turn the blast out put into a genome featur…
sr320 updated
7 years ago
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Hi sorry to bother you I'm trying to use methylartist for my data, but I am encountering some problems.
First I have my chromosomes named as contig_1, contig_2 ect... in all my data is it a problem…
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![image](https://user-images.githubusercontent.com/42739946/167442478-343230eb-e92f-48ea-9a69-1a35f9d5ca22.png)
Dear,
I ran RepeatMasked using a mixture library deriving from _denovo_ and trans…
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Hello,
I am trying to use the cnv_ltffinder2gff.pl and I keep getting this error:
```
stephenwyka@bspmgenomics:/data/wyka/transposable_elements/LM470$ ../../dawgpaws/scripts/cnv_ltrfinder2gff.p…