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## Background
One of the goals of this application was to be able to adapt to different genome types other than sars, which is linear single stranded RNA.
## Can be closed when
- [ ] Distance m…
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Hi @rcedgar,
thanks a ton for your efforts to provide useful tools to the community!
I was interested in switching from MAFFT to MUSCLE5 for large alignments of virus genomes.
There is feature in…
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Hi,
When classifying some Refseq sequences I noticed that some plasmids are being classified as virus. For example the reference assembly of Klebsiella pneumoniae (https://www.ncbi.nlm.nih.gov/data…
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Hi,
I wonder where I can access the fasta files of the genomes for the RNA-viruses within Serratus.
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[metaviralSPAdes: assembly of viruses from metagenomic data](https://pubmed.ncbi.nlm.nih.gov/32413137/)
> MOTIVATION: Although the set of currently known viruses has been steadily expanding, only a …
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Hello, thanks for this tool!I have encountered the following problems during operation. May I ask what causes them and how can I solve them?:
Screening bins
cp: cannot stat 'EQ-6-2000m-vDNA/04_Viral…
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Greetings,
I was testing your pipeline on the HPC center at our facility, and I keep getting errors with CheckV:
```
[2024-02-21 07:40:18] | Pre-check inputings. In processing...
[2024-02-21 07:…
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Hi Mike,
Recently, I ran cenote-taker2 and blastn against nt database & diamond against nr database with the contigs assembled by Megahit. I found that about 10000 sequences were classified as viruse…
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Hi Saima;
FVE-novel is an excellent tool when I used it to recovering the viral genomes from the viral metagenome datasets, actually I obtained more draft genomes than using the normal workflow. He…
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E.g. in
https://tools.wmflabs.org/scholia/taxon/Q202864 ,
it currently yields nothing, even though several Zika virus genomes are in Wikidata
https://tools.wmflabs.org/reasonator/?q=Q202864&lang=en…