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rcedgar
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muscle
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
GNU General Public License v3.0
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2 nts are "cut" from the rest.
#79
0xorial
closed
19 hours ago
2
How can I download v5 muscle?
#78
brilliant2643
closed
2 weeks ago
5
Error in `muscle': free(): invalid next size (normal): 0x00002b09305f4a40 ***
#77
Oceazh
closed
2 months ago
0
segmentation fault muscle -align testing.fa -output alignment.afa
#76
m-leitman
opened
2 months ago
3
Fatal error: allocflat.cpp(15) assert failed: uint64(Size) == Size64
#75
m-leitman
opened
3 months ago
1
python version of the code？
#74
2000lyn
opened
3 months ago
1
Support for Linux aarch64
#73
martin-g
closed
3 months ago
0
Running time for large numbers of sequences
#72
Tang-pro
closed
4 months ago
0
alignment error when short sequence
#71
orangeSi
closed
4 months ago
5
Segmentation fault : only a few small sequences to align
#70
JulieBorgel
closed
6 months ago
1
Segmentation fault (core dumped)riors
#69
MHassanSaeed
opened
7 months ago
2
fix compile error for unknown target
#68
orangeSi
closed
8 months ago
0
usorter.cpp(88) assert failed: L >= m_WordLength
#67
yifengyuan
closed
8 months ago
2
Specifying threads
#66
bioinfo007
opened
9 months ago
4
If is possible to release Muscle V5 version which has no dependence of omp.h?
#65
orangeSi
closed
9 months ago
8
Automatic optimal number of threads
#64
dreyes17
closed
9 months ago
2
Memory Object Too Large due to very long sequences
#63
bioinfonerd
closed
10 months ago
2
@ in output filename required for -perm all with -super5
#62
DeadlineWasYesterday
opened
11 months ago
1
gap penlty
#61
naama68
closed
10 months ago
2
Memory Object >4Gb error
#60
czhou135
closed
1 year ago
6
Can muscle be made to take two or more non-file cli arguments (input streams)? [v3.8]
#59
rtviii
closed
1 year ago
1
Resampling Clarification
#58
mcale6
closed
10 months ago
5
*** Error in `muscle': double free or corruption (out): 0x00007ffdb8176090 ***
#57
Wendy361
closed
1 year ago
2
how to use it in .net core? any one who can help me? thank you!
#56
qiuqingpo
closed
10 months ago
0
Where did profile-profile alignment go in v5?
#55
rtviii
opened
1 year ago
3
add aarch64
#54
lukaszsobala
closed
3 months ago
2
add aarch64 build action
#53
lukaszsobala
closed
1 year ago
1
Aarch64 muscle built from source fails
#52
lukaszsobala
closed
3 months ago
19
Muscle5.1 alignment error
#51
navkahlon240
closed
10 months ago
1
gcc
#50
besibo
closed
1 year ago
0
Segmentation fault while running muscle
#49
navkahlon240
closed
10 months ago
3
Multiple fasta files error
#48
navkahlon240
closed
10 months ago
1
Update workflow for portable macOS binary (remove need to install gcc@11), fixes #21
#47
blake-riley
opened
1 year ago
3
Minor: interface change from 3.8 to 5.1 may benefit from more helpful error message
#46
jweile
closed
10 months ago
1
Request: don't rearrange sequence order
#45
SethMusker
opened
1 year ago
2
allocflat.cpp(15) assert failed: uint64(Size) == Size64
#44
NicMAlexandre
closed
10 months ago
2
automatically reverse-complement nt sequences
#43
TDDB-limagrain
opened
1 year ago
2
Improve multi-threading efficiency?
#42
lukaszsobala
closed
1 year ago
2
Cannot open xxx.fas , errno=2 No such file or directory
#41
jljy47
closed
1 year ago
3
Floating point exception error (core dumped) running super5
#40
dnolin13
closed
10 months ago
7
Can you provide test documents？
#39
HuangseYuanli
closed
2 years ago
2
Fatal error UngappedSeq != m_UngappedSeqs[0] from efa_explode on resampled MSAs
#38
rcedgar
opened
2 years ago
1
FATAL: kernel too old
#37
jingydz
closed
2 years ago
0
dispersion value meaning
#36
Adarsh931
closed
1 year ago
12
Move the random number generation to a dedicated object
#35
althonos
opened
2 years ago
6
double free or corruption (!prev)eriors
#34
Adarsh931
closed
10 months ago
2
Error while using super5 command
#33
ChongLC
closed
2 years ago
1
CLUSTALW and MSF format
#32
ErisonChen
closed
10 months ago
4
Segfault with long sequences
#31
rcedgar
opened
2 years ago
2
Unknown option addconfseqs
#30
KSteffen
closed
2 years ago
1
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