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Hi, @stianlagstad !
I would like to know if there is a way to make a custom genome database, such as plant genomes, and then feed to _import_jaffa_ with a new parameter?
I saw you have added mm1…
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**Description of new feature**
Scope out the features that would be useful for a landing page.
**Potential features**
In no particular order:
- [x] Let users know what they must provide t…
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See also #4 for the long discussion on this topic.
I would prefer to use CHEBI:1234 ; simply because then people see where the identifier comes from with more ease. HMDB also includes their databas…
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Many motif databases use the TF name rather than the gene symbol (e.g. PU.1 rather than SPI1). Some of them have tables that allow for these to be easily converted to the actual gene symbol (HOMER, fo…
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Interesting tool - sounds very useful.
After changing the host.ID as suggested in the other Issue (in my case changed it to dec2021.archive.ensembl.org) , the Interface started up as intended and a…
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Hi there,
I run CELLEX and now am running CELLECT on Hippocampus dataset of http://dropviz.org.
Genes are originally mouse gene names, I mapped them to human Ensembl IDs using Ensembl Biomart.
…
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**Describe the bug**
Tried downloading the progeny mouse model but I get a TypeError: Nonetype is not iterable. Human works fine.
**To Reproduce**
```
model = dc.get_progeny(organism='mouse', …
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https://github.com/opentargets/data_pipeline/blob/master/mrtarget/common/EvidenceString.py#L153
Going to be harder because it relies on targets, diseases, and eco.
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### Describe the bug
During the merge, KG-IDG produces a large number of "node id [id] has no CURIE prefix" and "Invalid predicate CURIE" errors, though it isn't immediately clear *which source* t…
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Hi GWAS Team,
We are in the process of reviewing the logic of certain steps of our pipelines. For this, I need some help from you to better understand the data I could download from the GWAS Catalo…