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### Task Description
Currently, the Taxonomy Importer does two things
1. It queries NCBI to pull properties for organisms in Chado
2. It constructs a taxonomic tree using the information from N…
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There should be an easy way to validate that the cell lineage data in `lineage.json` is valid, including (but not limited to):
- Parent cell's cannot be in the last frame
- A cell cannot be in a f…
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As discussed in (https://github.com/cov-lineages/pango-designation/issues/1940), I suggest "whole tree" mode for those who wish to browse through the whole usher tree (and see its various data arrange…
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In the AIRR Standards section, we have:
- Study Reporting (MiAIRR)
- Data Model
- V(D)J Sequence Representation
- Metadata Representation
- Software Guidelines
- Data Commons API
- Ontologie…
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Dear Professor Yu,
Here, we constructed a phylogenetic tree using the neighbor-joining method in MEGA (command line version 11.0.10 ), including 3847 genomic sequences (attached tree file 1 [tre…
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Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…
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Hello, I'm trying to port xiaomi-riva to pmOS and I found your kernel. I wanted to ask few questions.
Is 4.9 kernel at https://github.com/SunnyRaj84348/android_kernel_xiaomi_msm8917/tree/lineage-17…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1809
Besides the main branch, there's a lot of separate emergences and seqs placed on artifact reversion branches.
My query e…
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Second proposal for a sublineage of B.1.20. The proposed sublineage is found in USA from public data but soon there will be more from Australia.
![Screenshot from 2024-06-03 14-20-17](https://githu…
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Hi! Thank you, the analytical workflow you provided is amazing and the most streamlined I could find for GESTATALT-like methods analysis.
I was just wondering at which point in the pipeline script yo…