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I get the following error when building kraken2 database:
`rsync: link_stat "/all/GCF/037/914/965/GCF_037914965.1_ASM3791496v1/GCF_037914965.1_ASM3791496v1_genomic.fna.gz" (in genomes) failed: No suc…
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Hi,
I am trying to install amos with jellyfish to obtain whole-genome coverage using 'kmer-cov-plot --jellyfish'.
$./configure --with-Boost-dir=/bin/BOOST/ --with-jellyfish=/bin/jellyfish/ --with…
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Hello SchulzLab,
I tried to run ORNA, but came out with the following errors:
```
(tsm-py3) tanshiming@S620100019205:~/Documents/CaoBin/October-2018/trimmed_duk_kmer31$ ORNA -pair1 /home/tanshi…
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For more background see https://github.com/eblerjana/pangenie/issues/62.
Long story short, I'm trying to replicate and make use of the personalized pangenome pipeline described in your recent paper…
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Hi,
I followed the seekr tutorial, but it seems the `-nb` flag does not work for seekr_kmer_counts anymore? If `-nb` does still work, what does the flag do?
```
$ seekr_kmer_counts X_sequences_…
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The assembly finished but I got this message:
== ERRORs:
* system call for: "['/Volumes/ExternalHD500/SPAdes-3.13.0-Darwin/bin/spades-core', '/Volumes/ExternalHD500/spades_K21_25_33_55_C1/K55/con…
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Hi, I'm getting an error when trying to run my code against the eclip data and not quite sure what this means. I've tried re-downloading the supplied hg19.fa and eclip data but still no luck.
Ln…
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Dear pioneers for much improved pathogen detection,
we have an example from nanopore (resulting in long reads > 1500 bps) where the kraken1-part of krakenuniq counts over 12000 kmers (k = 31) for a…
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[summary.txt](https://github.com/user-attachments/files/17161668/summary.txt)
Thank you so …
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Add support for matching amino acid kmers. An amino acid kmer can be represented as a nucleotide kmer where each amino acid gets mapped to a canonical (e.g. lexicographically smallest) codon.
An am…