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When writing ultralong nanopore reads from circular contigs (in this specific case chrM), noodles_cram::Writer::write_record fails with
```
thread 'main' panicked at 'index out of bounds: the len is…
tedil updated
2 years ago
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SOCKS is a tool for pangenomics - can be fully removed.
What about:
- Splitting index into parts
- Building compressed IBF
- Only computing minimisers
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Hi,
I'm running hifiasm v0.16.1-r375 on HG002 DeepConsenus reads in trio mode. When I evaluate the assembly using merqury DBs, I get a high hamming rate (>20%). I know the parents are correct and t…
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Hi @glennhickey,
I've started `minigraph-CACTUS` without major problems on my HPC cluster. However, at step 3 (_cactus-align_) the script terminates with an error, and I'm unable to generate the **…
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**1. What were you trying to do?**
Generate an XG index from a GFA file.
**2. What did you want to happen?**
Finish it without errors or strange printouts.
**3. What actually happened?…
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I can download it just fine from the command line
```
aws s3 cp s3://human-pangenomics/submissions/fc721e22-1ce2-4d38-bf88-72cf231bcb90--UCSC_2020AUG_assembly/2020AUG26_upload/HG02109/HG02109.mat.fa.g…
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Hello!
I am trying with the RepresentationUnification module to get a unified VCF from an ONT BAM of about 100GB. I've been trying to run the RepresentationUnification module on RTX2070 and 1080 fo…
ghost updated
2 years ago
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## Short description of the problem
Inclusion of `anvi-scan-trnas` in the default snakemake workflow JSON file causes downstream hmm annotation error.
## anvi'o version
Replace this text with…
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Hello,
Recently I have used HiCanu (v2.2) to assembly one mammal genome (genome size: ~2.3 Gb, heterozygosity: ~1.7%), I assembled this genome with default HiFi recommended parameters, but I found…
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Dear human pangenomics consortium,
Thank you so much for putting such a wealth of data into the public domain ! I've used the PacBio data to investigate CNV on the STRC-STRCP1 locus, and how we ca…