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Dear FragPipe Team,
Recently, I am fucosing on labile-mode search with FragPipe. However, I don't know how to get the matching results of fragment ions(b,y) with labile modification
Just like t…
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Currently, the IdScores are modelled as a List of key-value pairs: ["score1:value1", "score2:value2"]. This is good for compatibility across different parquet implementations duckDB, Rust Parquet etc.…
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I noticed this odd BN.1.3.5 singlet sequenced
hCoV-19/France/IDF-APHPSU_PSL-662405025479/2024|EPI_ISL_19193543|2024-05-12
BN.1.3.5 wasn't common in France, much more so in East/South East A…
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Dear Fragpipe Team,
thanks for your amazing work!
We are currently trying to extract information at fragment ion level from FragPipe results.
Ideally, we would need a report file that provides add…
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Currently, `remove_unused_fragments` is only implemented for dense libraries.
An implementation for flat libraries would be very usefull and should be easy to implement.
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My peptide cannot be described with proforma.
Does anyone have an example script of how to annotate from a custom table of fragments in tabular format ie (name,mz)
```import matplotlib.pyplot as…
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Dear Dr Kuharev,
I hope you are well. Having read your 201% article in Proteomics and 2016 in Nature, I would like to have a look at IsoQuant. However, I cannot get the software to run on my PC – I…
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Timstof .d directories are now natively supported by rust: https://github.com/lazear/sage/issues/117#issuecomment-1928514516, using timsrust to load them.
I just ran some quick tests on some test dat…
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Hey,
I wanted to run PepNovo+ on my mgf file with ~600k spectra. I used the following parameter file:
[pepnovoplus.txt](https://github.com/compomics/denovogui/files/14551531/pepnovoplus.txt)
…
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Hello,
I wanted to try the model on my mgf files. Since I don't have any peptide sequences and want to predict new ones, I dont have a peptide or sequence parameter in my mgf files. I tried running…