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Hi,
I have been using Braker2 for quite a while now. Right now I am working on a quite fragmented genome of size ~1 GB. I used Braker2 but couldn't run it past some issue related to GC content.
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I have the following BAM file, repeat masker GTF and genome GTF.
They are downloadable here:
- [BAM](https://s3-ap-northeast-1.amazonaws.com/stemrim-pub/ewijaya/discuss/velocyto/input.sorted.bam)
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sr320 updated
8 years ago
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Hi
I'm running funannotate using docker. I used redmask to softmask my sorted assembly.
When I pass the assembly to the predict function only using the soft masked genome like this:
funannotat…
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Dear developer
Thank you for developing such innovative software, I would like to know if this software can be adapted to PacBio CLR, PacBio Hifi and Nanopore data？
Thinks
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For alignment of 159 query bases, 161 target bases and 159 aligned bases trimming 1 bases from each paf end
For alignment of 160 query bases, 161 target bases and 160 aligned bases trimming 1 bases…
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Hello developers, I don’t know where to download TE_DB such as homo sapiens. Can you provide a way to download TE DB?
Thank you
TE_DB: "/path/to/database_TE.fasta" #Database of TE (…
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Good day,
I am trying to run the **genePre** command but I cannot find the **config_file** (or maker_config). Is it an installation/compilation issue?
Thanks
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hi, shujun
Thank you for developing this tool !
I ran into some problems while running this test file, and here is the code I ran：
```
perl ../EDTA.pl --genome genome.fa --overwrite 1 --sensitive…
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Dear Alex;
I am performing RNA sequence analysis to determine the DE genes in a human cell line sequenced with Ion Proton. I am using the default STAR settings and I get a low percentage of uniquel…