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See https://github.com/PMR2/pmr2.omex/issues/3
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---
id: copasi
version: 4.35.258
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/37ac0ac28ccf454527a58c32f8e9efed1de3bc5f/biosimulators.json
specificationsPatch…
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Either
(a) Remove COMBINE archives nested in archives
OR
(b) Replace `http://purl.org/NET/mediatypes/None` with `http://identifiers.org/combine.specifications/omex`
Example:
https://gi…
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### Contact Details
_No response_
### Location
Other (please describe below)
### What happened?
Combine API crashes when trying to load metadata from combine archive
### What made it happen…
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When I send a request to the /create Enpoint, containing the following JSON:
JSON
```
{
'name': 'decarboxylation',
'pubmedid': '23232',
'url': 'www.example.com',
'doi': 'doi:…
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![image](https://user-images.githubusercontent.com/900538/155311647-90c7815c-eeb5-4330-aa2b-ec1ecb0a96d1.png)
### Background
Life science researchers use computational models to articulate and tes…
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I am a bit lost tracing this and trying to find the error. I have the following code:
```python
omex_metadata=[{
'uri': '.',
"combine_archive_uri": BIOSIMULATIONS_ROOT_URI…
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I think the current implementation of the pysces thinlayer does not update global parameters.
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VCell now runs successfully in runBioSimulations with 5 example simulation runs. All runs terminate successfully. However, the results contain NaN for outputs of failed simulations (Euler with step si…
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Identified by @bilalshaikh42. Motivated by the use of OMEX manifests by PMR.
All of the OMEX manifest I've seen have entries for their parent archives. The one exception is PMR. We could raise an w…