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Hi,
I tried to install "immunedeconv" package to a supercomputer that my university uses. It is Centos ver7. According to the instruction, I installed it through Bioconda but it doesn't work. I pa…
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Hi Gregor,
Thank you for your excellent work and I am really interested in this package. However, when I installed it on the Google Colab, there was something wrong. I searched some websites but did …
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It works with blueprint_encode and hpca as well as a different custom ref.list. The one below which causes the error was made at the same time as the one which works, I also think it has worked in the…
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Hi, Xuranw
thanks for your great package.
I just have a question in your paper. Since you have compared CIBERSORT with MuSiC in your paper, what is the signature for the CIBERSORT you used?
Looking…
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Would be best to find better labels for our four ways of displaying and working with CIBERSORT fractions.
The values are estimated by CIBERSORT (“Original” fraction), and various combinations of th…
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Should we represent the results from the tree validation datasets (Hoek, Racle, Schelker) independently or combine them?
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Thanks for developing this software!
I have successfully downloaded and run the pipeline from your tutorial on the sample data sets. When I try to perform the pipeline on my own data I get an error…
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For some breakdowns (e.g., CIBERSORT cell fractions), displaying all ~20+ bars side-by-side is a bit overwhelming.
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When drawing the correlation plot, the text for row labels is often obscured by the containing window. Most easily visible for longer labels, such as original , non-aggregated CIBERSORT values.
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The Shiny app will initially be **the** initial version of the iAtlas portal on release (pre-April 5th, 2018). Need to settle on a more suitable overall layout for visualization panels and any other i…