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Hi @gbouras13,
Many thanks for your excellent tool. I am trying to implement Plassembler (v1.6.2) within one of my in-house Nextflow pipelines on a Linux machine. Plassembler analysis ran successfu…
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## UC14. Genome-wide Sequencing Analysis to Identify the Genes Responsible for Enchondromatoses and Related Malignant Tumors
**Use case information:** Please see [one-pager](https://github.com/NIH-…
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Hi,
I have some questions regarding the results I obtained.
I was looking for a gene cluster conserved in roughly all the genomes I have included into my local databases (135 genomes, cerated fr…
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## Short description of the problem
Anvi'o told me that my internal genomes all have the same hash and won't accept the flag it suggested to use to overcome that.
## anvi'o version
Anvi'o ...…
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Hi there! Thanks for the pipeline, it looks like exactly what I needed for my analysis.
Quick question - do I understand it correctly that if I have my reference genomes each in multiple contigs, …
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Hi I am facing a issue in Whole genome analysis
Chr1 1115 1116 CHG 10 + 1115 1116 255 10 80.00 CHG
Chr1 1117 1118 CHG 14 - 1117 1…
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The option to select Illumina, Nanopore, etc is included on the interface for the assembly service, but is not provided in the CGA service. This came to my intention when a user noted that she was as…
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Hi Ben!
Reposting this from the slim-discuss group. Thanks for helping out!
I tried on Slim 3.7 (when it was written) and updated the script for the newest version I believe but I get the bug for bo…
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Hi,
I have ran the ipdsummary and got the base modification GFF file. Then I want to use `summarizeModifications` softs for summarizing kinetic DNA modifications. But I read the SMRT link manual, I o…
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When running sample data HG00119, I meet the error "No annotation.csv found." .
The following is the conf file:
#!/bin/bash
mtdb_fasta=chrM.fa
hg19_fasta=hg19RCRS.fa
mtdb=chrM
humandb=hg19RC…