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Hi,
I have been following the [dbbact calour](http://redirect.viglink.com/?key=71fe2139a887ad501313cd8cce3053c5&subId=7332523&u=http%3A//biocore.github.io/calour/notebooks/microbiome_step_by_step.…
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Hello, just tried to install both on my local machine (mac) and on a linux aws machine. Both have miniconda with the bioconda channel added.
Running:
conda create -n SCNIC python=3 scnic
Gives …
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Hey again,
I was able to run this pipeline successfully with test and real data, but am running into an issue I can't solve with a new set of real data. Here is my command:
```
nextflow run mai…
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# Current Behavior
Error message about ncbi server connection but this is a marker download (raw.github.com download)
```
File "/bigdata/operations/pkgadmin/opt/linux/centos/8.x/x86_64/pkgs/a…
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Submitting Author: Moritz E. Beber (@Midnighter)
All current maintainers: (@Midnighter, @sofstam, @jfy133)
Package Name: taxpasta
One-Line Description of Package: TAXonomic Profile Aggregation and …
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**Improvement Description**
During a presentation a potential user asked me, how easy was to import their data into Qiime2 to take advantage of the analyses and visualizations. Thus, I believe it wil…
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Hi,
Can we use an OTU-table as input for CoMA? We have OTU tables with taxonomy added (in the last column), and i was wondering if we could use CoMA to generate figures/graphics?
Best,
Sam
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* link to support ticket: [#2023032260001092](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=114924)
* website: https://huttenhower.sph.harvard.edu/biobakery_workflows
* ins…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
Hi guys. I'm running `taxpasta` with `--add-lineage --add-id-lineage --add-rank-lineage` o…
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Hi,
I haven't been able to integrate picrust2 with STAMP in order to plot the picrust2 results,
I have been trying to follow this tutorial (https://github.com/LangilleLab/microbiome_helper/wiki/PI…