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I want to extract euk genes/proteins from metagenomics data. I want to build a gene/protein catalog for euk genes.
Seems that metaeuk is a reference guided approach ( based on mmseq2) and Plass is a …
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I just took a look at the GFA output and noticed that, unlike tools such as seqwish, Bifrost does not output the paths corresponding to each node. Is it possible to obtain the locations of each of the…
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**Are you using the latest release?**
1.8.15
**Describe the bug**
Can you please explain the difference between "clusters" and "smCOGs" parsed by antismash? Are "clusters" actually protoclusters?…
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hi,
fusion names of my output of star-fusion like these below. I am a beginner about this analysis and I wonder that what the "@" and "ext" mean in these names? could you give some paper or tutoria…
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Hi Sion,
Is there a way to control the % of genomes that must have a gene for it to be considered core? From what I understood it is set at 95%, but thresholds like 99% are also common in the liter…
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(METABOLIC-v4) lizhihua@lizhihua-T640:/media/lizhihua/software/METABOLIC-v4/METABOLIC$ ./run_to_setup.sh
tar (child): Accessory_scripts.tgz: Cannot open: No such file or directory
tar (child): Erro…
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**Copy and paste the exact command you tried to run**
flair collapse \
--threads 18 \
--stringent --check_splice --generate_map --annotation_reliant generate \
--genome /Sean/Salmon/Human_Ref_Genc…
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Hi!
Thank you for this amazing tool! I'm really impressed at how fast it complete the task :) I built a pangenome with 150 Vibrio parahaemolyticus isolates, but was confused about interpreting diff…
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Are you looking for a way to contribute? Great, we're happy to have you!
We'll comment below with the most up-to-date information about where help is needed.
As a note, here is some information …
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Hello,
Is it possible to construct the metabolic network diagrams at taxonomic levels other than phylum? Such as order, family etc?
Thank you,
Sarha