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## Primary motivation:
- Supporting the [Great Lakes Center for Fresh Waters and Human Health](https://sites.lsa.umich.edu/greatlakeshumanhealth/) (NSF / NIH OHH grant)
- Data generated by the cent…
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Hello!
I have ONT data of a single amplicon that is ~4500 bp in length and would like to identity SVs. I am interested in any SVs present, but specifically, there may be repeats introduced by a h…
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Dear Tobias,
I'm interested in applying SLAM-seq to investigate synthesized reporter libraries to uncover functional variants (usually SNPs) that change mRNA kinetics, in a massively parallel reporte…
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### Feature Request
CDC selects samples for their dashboard (and models) that have a complete S gene. We need to begin tracking the S gene so we know how many of our samples are making it to the CDC …
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Hello,
As far as I understand, the pipeline executes the steps of extracting UMIs and clustering the sequences based on those UMIs twice: once in the raw reads, and once again in the consensus rea…
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what's mean of No amp/Invalid in amplicon_decomposition_class
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Hi,
Great tool for implementing L. pneumophila SBT! Thanks.
I'm trying to call SBT using nanopore sequenced multiplex PCR amplicons. However, I get "no product" results for some of the alleles. S…
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Hi
Looks like a great tool I just wondered it will work with amplicon data. I seem to recall haplotype caller struggling with the lack of sequence diversity.
Thanks
Matt
mcgml updated
8 years ago
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For analyzing ITS amplicon data, in filterAndTrim function "out