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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Hi there! I'm attempting to perform a homology search for a single gene (a bacterial protein) across all sequenced bacterial genomes to estimate the % of species that carry the gene. Is there a way to…
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Hi,
Can i use the tool with a fasta reference file with different bacterial genomes ?
I’m trying to improve the model when running a metagenomics experiement, focusing only on most abundant (10 diff…
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### Description of feature
It is unclear if this pipeline will work on any organism assembly?
Is it haploid genomes only?
Is it especially for bacteria?
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Hello!
Can STARsolo be used with GFF3-annotated genomes of bacteria, without splicing?
I'd like to try STARsolo for bacterial scRNAseq data, especially with different multimapping options. Howe…
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When I try to run abricate against my bacterial genomes .fna (total 20 in number) using the VFDB database, the result shows that there are no genes in any of them.
Command used: abricate --fofn lis…
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Extrapolated from common sequencing targets from the SRA, and sequences that returned false positives during initial database screenings:
- Human genome - integration sites: https://hgdownload.soe.…
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Hello, I have encountered some tricky problems.
1. I can't download your kmer database from Google drive in the HPC cluster under terminal. Although I tried several google drive command line download…
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@ctb suggests it can.
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I feel like this type of method would work as a fantastic competitor to bacterial whole genome alignment software such as Mauv/progressiveMauve. Have you tried validating this software with bacterial …