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Hi, I am having hard time because it keeps giving me this error. I am sure about the paths for the bam files and I have tried it different ways and paths but still giving me this error. If you can p…
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Hi,
I am aware that MACS2 is designed for finding peaks using ChIP-Seq data. However, when I run MACS2 on RNA-Seq data using default parameters, it seems to work as I expected. Now my question is d…
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When adding multiple bam files with the same name, they overwrite each other while doing the sorting. (braker.pl line 5501)
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Hi,
I am a newbie. Could you please help me ? Many thanks!
**Describe the bug**
I do not know how to work with multiple modbam files (generated with dorado)
**To Reproduce**
```
exon_tibbl…
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Dear author,
I have used Basevar on 5 BAM files, each approximately 3GB in size, but it requires a substantial amount of memory to run successfully, specifically up to 200GB. I would like to know i…
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Hi, I have encountered an issue when running my BAM file the error mentioned 'Segmentation fault' after reading the BAM files.
This is my config files:
[config.txt.txt](https://github.com/user-a…
Calhs updated
3 weeks ago
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Hi !
Thanks for the amazing pipeline! I remember reading before, but couldn't find the details now, so here I am. What is the number in the TAR read before _0 or after the strand? Is it the number of…
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**Operating system**
redhat
**Package name**
```
pbmm2 1.13.0
Using:
pbmm2 : 1.13.0 (commit v1.13.0-2-gbcd99f5)
pbbam : 2.4.99 (commit v2.4.0-23-g59248fe)
pbcopper : 2.3.99 (comm…
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I am encountering an issue where deepmosaic-draw is not recognizing a valid input file. The command I am running is as follows:
singularity exec -B variant_calling/software/annovar/annovar:/mnt/ann…
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Hi,
Thank you for developing this software. I would like to try it, but I encountered some problems.
I ran MATES like this:
```python
import MATES
from MATES import bam_processor
from MATES impo…