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I'm using win11 22H2, my system theme is dark, and I never changed my system theme, it keeps dark all the time.
When using Fork, I set the theme to light theme, but sometimes it switch back to dark t…
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From tony:
Now that db-xrefs.yaml/json is in production, there is a small issue
that I think needs to be taken care of, concerning the use of
BET:0000000 as an entity_type.
BET:0000000 is used as th…
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I just updated the dependencies for dbcan today to what is on the readme document and re ran on the same set of genomes and everything worked fine. But upon inspection of the hotpep outputs there is n…
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https://github.com/WrightonLabCSU/DRAM/blob/ac83ba7c6ed081c68abca6290be55a6ba7d28865/mag_annotator/summarize_genomes.py#L45
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I got an error from `bioservices` when it was running the `cazy_webscraper` application. I opened an issue [there](https://github.com/HobnobMancer/cazy_webscraper/issues/111).
```
File "/usr/local…
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even with the shortened days. 14.000 RF/tick for a t3 is a bit cazy, considering the leap from t2 to t3 in resources is mostly ender pearls, which can be farmed.
i dont know if its configurable, bu…
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Hi,
Thank you for updating Saccharis! I've used the older perl version and found the tool useful and fun.
Now, when trying to run SACCHARIS_2 after successfully installing it with conda, I noticed…
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Is there an option for users to provide their own databases for the annotation step. I would like to use more recent versions of PFAM and dbCAN for my dataset
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Hi @wegnerce ,
Im currently working on metatranscriptome of plant samples as well and i've been referring to this amazing work for as a guidance for my bioinformatic analysis. Im very new to all bi…
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enrichm annotate --output ./dereplicated_genomes_enrichm_annotate --genome_directory ./dereplicated_genomes --ko --pfam --tigrfam --hypothetical --cazy --threads 2 --parallel 10
error:
Traceback…