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Hi,
I've tried MOFA with several datatypes, some having ~50 samples while others have 15 or 22 samples.
Here's an overview of the data:
![image](https://user-images.githubusercontent.com/2590…
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**Anna Greka** - Anne emailed (who works on ion channels) to see if she knows someone to talk with - Dec 15 https://mail.google.com/mail/u/0/#sent/KtbxLzfphpSXKvqjLksXdBkZFbLTKPBNnB
**Eitan Hoch** …
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Hi, a colleague of mine performed a differential compartment analysis between a CRISPRi and scrambled control experiment using dcHiC. He provided me with a bedgraph file for the full compartment detai…
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This issue covers 3 different types of CRISPR screens.
Related publications:
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443183/
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181115/
* htt…
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Hi,
while looking for tool to analyzie our CRISPR data I encountered yours. I'm not sure though, if this can do what we need.
In our CRISPR run, we have our guides in the R2 file of the pair, so…
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Hi,
I used Flute as a follow up to the mageck pipeline (mageck count -> mageck mle). In comparison to the mle values, the Flute normalization by cell cycle increases the absolute value of the beta s…
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The first paper to arise from the Open Source Malaria Consortium is [published today in ACS Central Science](http://pubs.acs.org/doi/full/10.1021/acscentsci.6b00086), describing Series 1. Congratulati…
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Thanks for making this tool available. It was recommended to me by a colleague. I'm new to this kind of analysis and was just curious about the advantages/disadvantages of this tool compared to the M…
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Hello! I'm trying to use crispy to make a CNV correction of my CRISPR/Cas9 KO screen data, but first I wanted to run the example script, mostly to get a feel for the package and check that everything …
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We use STAR Solo to map results of CRISPR screens, specifically at one of the steps we map guide RNA reads that we have introduced and assign them to cells . For that we generate artificial reference,…