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**Steps to Reproduce**
1. Switch to Macro mode
2. Open Ket file with Peptides and branch
[ketcher (branch).zip](https://github.com/epam/ketcher/files/14918075/ketcher.branch.zip)
![image](https://…
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Prediction with small fasta sequences causes errors. I think this may be due to not finding a matching template.
>test.fasta
IALAVAALF
Running PSIPRED
Running hhsearch
Error executing job wi…
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Hi RaverJay,
I am trying to use your pipeline from a long time but unable to.Please help me understand and fix this following error.
> Error executing process > 'prepare_fasta (24)'
>
> Caused …
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Hello,
I'm trying to download [ComPIL 2.0 FASTA](https://github.com/robinparky/prolucidComPIL/blob/c1bc08293326f934ae82b8727742f2653692dba6/README.md?plain=1#L68):
ftp://massive.ucsd.edu/MSV000082…
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:bug:
Hello, I ran the theiaproke workflow on my local computer (macOS, M3) using miniwdl. I faced with the aborting workflow when running task: shovill_pe.
the run command is `miniwdl run $HOME/t…
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Hi, thank you for developing such an excellent software.
### pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#### Description
I have successfully run pVACse…
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Hi @mikolmogorov,
Thanks a lot for creating such a great tool!
I am new to the genome assembly field. Could you provide some information regarding the relationship between phase block (phased_bloc…
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I installed localcolabfold and copied HighFold git repo into my localcolabfold.
So that my localcolabfold git repo looks as
![Screenshot 2024-06-25 at 5 29 04 PM](https://github.com/hongliangduan/…
kimdn updated
2 weeks ago
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Hi Douwe Schulte,
Thanks a lot for developing such a great tool which benefits the whole proteomics community!
I am using several de novo peptideing sequencing tools (including casanovo) that di…
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@mheinzinger I get this error on some of the fasta files when I use generate foldseek db script. Is it because there is a mismatch in the fasta header or the 3di sequence was not predicted for a parti…