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I can access the recombination map for a species (e.g. HomSap) using e.g.
```
species = stdpopsim.get_species("HomSap")
contig = species.get_contig("chr22")
map = contig.recombination_map
```
…
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genetics maps is required for rmfix . but my study object is not hunman . so I can't download genetics map from website . Is rmfix only suit for hunman ,or should I make a genetic map special for my o…
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Hi !
I try to run the SHAPEIT4 with a multisample .vcf from WES via docker:
`docker run -v /Users/shapeit:/shapeit lifebitai/shapeit4 shapeit4 --input /shapeit/out.recode.vcf.gz --map /shapeit/…
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Hi,
Thanks very much for making this script of LDpred2. However, I got the following error, which I didn't see before. Do you have any idea about what was going on?
> Error: Tested 1047164…
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**Authors:** Benjamin C. Haller, Philipp W. Messer
**Abstract:** Individual-based, genetically-explicit modeling is an essential tool for connecting empirical population genetic patterns to hypothe…
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Greetings,
I'm running into an error when chunking the reference. Here is my command
```
singularity exec /data/containers/glimpse_v2.0.0-27-g0919952_20221207.sif GLIMPSE2_split_reference \
--re…
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So far I've been unable to find recombination rates for GRCh38. May need to liftover the previous GRCh37 rates. The GRCh37 rates currently in locuszoom were generated by lifting over GRCh35:
> Thi…
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I had a malformed genetic map file, and while diagnosing and fixing this, I noticed that shapeit4 currently reads in input files, then reads in the genetic map sequentially. It took substantial amount…
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Consolidate.
-- DS will be automated after Connor's script is done. This covers genomes, transcript, genetic QTL, gwas, maps, etc. data.
-- I think separate link to PeanutMine is not necessary.
-- …
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Hi,
Thanks for your project, Its awesome and help me a lot on my working project. I also have tried lifted chrom maps to CHM13 a weeks agos, your project solved my problem.
I want to know a few d…