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Hello!
I see, that two nodes in unitigs graph (gfa) are not linked by an edge. At the same time this nodes are merged togehter in the primary assembly...Why there is such inconsistency between unit…
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Adding ability to output `layout` results in `GFA` format would allow us to use bandage tool for drawing assembly from command line.
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I'm interested in using splice graphs as reference systems in vg. It would be possible to use ChopStitch's output to do so directly if it were able to write [GFA](https://github.com/GFA-spec/GFA-spec)…
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Hi
Can we get .gfa file output to view the graph?
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Hi, I'm a Ph.D student in bioinformatics,
And I have some questions while using the "minigraph-cactus".
I run the program, in order to get some pangenome and vcf files in the graph.
I have 24 sequ…
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**1. What were you trying to do?**
Trying to run the vg gbwt command
**2. What did you want to happen?**
Command to provide
**3. What actually happened?**
Terminal Output:
```
terminate…
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Hello,
I would like to assemble my MinIon output (fastq file) data with minimap and miniasm. I was able to create the .paf.gz file with minimap which looks good. However when I’m trying to assemble …
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Hi @maickrau,
I'm trying to map Nanopore R10 and Hifi reads to the HPRC graph and its super slow- I'm mapping 1 million reads on 64 threads and it still hasn't finished after 20 hours. Is this what…
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Have you considered adding GFA output to abPOA?
I am likely to make a patch to do this, but I wouldn't mind if you beat me to it. 🙂
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Hello,
I am trying to use a variation genome graph to genotype SVs on more samples sequenced with short-reads, and I'm trying different avenues (see 1)graph from vcf + giraffe and 2) graph with pggb+…