-
Hi Timothy,
I am completely new in bioinformatics and now I have data on 10X CRISPR screen to analyse. I will like to use sceptre Nextflow tool. Before using my data I will like to go through the "Ga…
-
Hi GEMINI team,
I use your tool to analyse a combinatorial CRISPR screen. I run the dataset from the tutorial (http://www.bioconductor.org/packages/devel/bioc/vignettes/gemini/inst/doc/gemini-quick…
-
This file throws exception in the browser when rendering.
[RGR_12_grna_rna_dCAS9_Mxi1_protein_complex_formation.zip](https://github.com/VisBOL/visbol-js/files/2532606/RGR_12_grna_rna_dCAS9_Mxi1_pro…
-
Hello! I've been able to get Cast-seq to run on the G3_TOY data, but I was curious what the other files are that are called on from the G3_TOY directory. I can't find a description in the paper or in …
-
Hello,
When using CRISPRessoPooled with the --alternate_alleles parameter, what goes in the AMPLICON_NAME and AMPLICON_SEQUENCE columns of the description file? Should all alleles go in those colu…
-
Could the outcome be integrated with statistics, to guide further wet experiments to detect high risk off target event? Thanks
-
Hi,
I am trying to design sgRNA for campylobacter, but realised the campylobacter genome sequence is not available in the shiny app. Is there a way to upload my own genome sequence into the app? …
-
The search option gives me an ID for a given gRNA sequence. Is there also a way to retreive the CRISPR sequence and location computed in the get_all_crisprs step?
Also, is there a way to retreive the…
-
-
Hi, Akihiro
I met some problems when I try to use DAJIN in a benchmark between different nanopore genotyping methods.
1) I run your method on the server and I don't have the sudo permission so I can…