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akikuno
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DAJIN
One-step genotyping software using a long-read sequencer
https://doi.org/10.1371/journal.pbio.3001507
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installation and environment issue
#48
chengarthur
opened
1 year ago
1
Bump numpy from 1.13.3 to 1.22.0 in /utils/NanoSim
#47
dependabot[bot]
closed
2 years ago
3
bug-fix
#46
akikuno
closed
2 years ago
0
Genomes, number of sgRNAs
#45
amv33576
closed
2 years ago
1
Merge to master from manuscript-version
#44
akikuno
closed
3 years ago
0
update manuscript-version
#43
akikuno
closed
3 years ago
0
Rolling mean to ignore fuzzy deleted mutation
#42
akikuno
opened
3 years ago
0
fix typo
#41
akikuno
closed
3 years ago
0
日本語ドキュメントの加筆
#40
akikuno
closed
3 years ago
0
fix typo
#39
akikuno
closed
3 years ago
0
fix typo
#38
akikuno
closed
3 years ago
0
Update README
#37
akikuno
closed
3 years ago
0
Command line argument parse
#36
akikuno
closed
2 years ago
0
Input from Guppy's demultiplexing
#35
akikuno
closed
2 years ago
2
Update README
#34
akikuno
closed
3 years ago
0
update to v0.4
#33
akikuno
closed
3 years ago
0
Update to v0.4
#32
akikuno
closed
3 years ago
0
Segment `clustering_allele_percentage.sh`
#31
akikuno
opened
3 years ago
0
Update conda installation
#30
akikuno
closed
3 years ago
0
Develop
#29
akikuno
closed
3 years ago
0
update VERSION=0.3
#28
akikuno
closed
3 years ago
0
Develop
#27
akikuno
closed
3 years ago
0
update: retain reads < reflen * 1.5 (*before 1.1)
#26
akikuno
closed
3 years ago
0
Progress bar
#25
akikuno
closed
2 years ago
0
threshold 5% to 3%
#24
akikuno
closed
3 years ago
0
BIG UPDATE OF `CLUSTERING.R`
#23
akikuno
closed
3 years ago
0
add `HDBSCAN`
#22
akikuno
closed
3 years ago
0
Develop
#21
akikuno
closed
3 years ago
0
Develop
#20
akikuno
closed
3 years ago
0
HDBSCAN memory leak
#19
akikuno
closed
3 years ago
1
Develop
#18
akikuno
closed
3 years ago
0
clustering for point mutations
#17
akikuno
closed
3 years ago
0
Develop
#16
akikuno
closed
3 years ago
0
Move ”$mutation_type" to sub-commands
#15
akikuno
closed
3 years ago
1
Cluster and merge alleles using pvclust
#14
akikuno
closed
3 years ago
1
Add: details_plot.R
#13
akikuno
closed
3 years ago
0
Marge request
#12
akikuno
closed
3 years ago
0
Add feature: Consensus sequence of abnormal allele
#11
akikuno
opened
3 years ago
0
GGGenomeがメンテナンス中のときの代替を探す。
#10
akikuno
closed
3 years ago
1
"clustering_allele_percentage.sh"の改善
#9
akikuno
closed
3 years ago
1
Conda環境のセットアップをスクリプトにまとめる
#8
akikuno
closed
4 years ago
0
IGV.jsで特定のサンプルを見られるようにする
#7
akikuno
closed
2 years ago
0
Training時のWTはシミュレーションではなくて、controlをもちいる
#6
akikuno
closed
4 years ago
0
Dedependence on NanoSim
#5
akikuno
closed
2 years ago
0
大型のinsertionが入ったときのコンセンサス配列が表示されない
#4
akikuno
closed
3 years ago
1
Sequence logoが見難い
#3
akikuno
closed
4 years ago
1
エクセル出力
#2
akikuno
closed
4 years ago
1
ggplot2でのアレル表記で、変異部位が重なって見難い
#1
akikuno
closed
4 years ago
0