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> 5. VHLA - On the audio, this sounds like it’s stepping up in tone. Like maybe something like “quick2-quick32’. Definitely going uphill. But doesn’t both “no” and “not” have a different downh…
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Hey Michael,
For a current project we are working on, we are trying to use Sage with HLA peptides, specifically from the [thunderPASEF method](https://www.nature.com/articles/s41467-024-46380-y). W…
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gliph-group-scoring fails when hla option is not specified. How does one score the convergence groups without doing HLA calculations? Does this depend on whether we have a Patient column in the TCR_TA…
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### Installation Type
Docker
### pVACtools Version / Docker Image
griffithlab/pvactools:latest
### Python Version
_No response_
### Operating System
_No response_
### Describe the bug
I have …
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Rozmyslet, jak by měla informace frequent/infrequent ovlivňovat převod do SPLIT ve funkci `_convert_potential_hla_types_to_low_res`:
```python
def _convert_potential_hla_types_to_low_res(
p…
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Hello;
When I import .dmx of face modeldoc won't reconize like HLA model editor. HLA model editor reconize correcly and even I put compiled .vmdl_c to game reconize.
But when I import same .dmx wi…
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### Installation Type
Docker
### pVACtools Version / Docker Image
latest
### Python Version
_No response_
### Operating System
Ubuntu
### Describe the bug
When running pvacseq to make predict…
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_Issue [HLA-1236](https://jira.stsci.edu/browse/HLA-1236) was created on JIRA by [Rick White](https://jira.stsci.edu/secure/ViewProfile.jspa?name=rlw):_
I noticed a couple of cases where HAP-SVM co…
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What is the best way to obtain counts of two alleles of each HLA subtype? I tried to include both alleles, but the resulting matrix contains some extra rows (using -f and -g option).
For example, t…
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Hello dear moderators. I have a repository with `*.hla` files, which is source code from the High Level Assembly programming language, also known as simply HLA. I would like them to show up as just **…