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As in the title: when custom HLAs are used the mixMHC2pred is not run. I have both HLA class I and II defined in the file. I suspect this may be because it is dependent on HLA_HD but I'm not sure.
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py-ARD doesn't seem to have a redux mode for first-field DNA nomenclature yet.
The current US organ allocation system supports all three of these HLA specificities: `DRB3*02:02`, `DRB3*02`, and `DR…
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Hello,
Does HLA-LA support to update IMGT db ? or to use specific IMGT version ?
Best
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### Is your feature request related to a problem? Please describe
Port hla-la to nf-test from pytest. Include both preparegraph and typing.
### Describe the solution you'd like
_No response_
### …
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Hi
For some downstream analysis I need to identify the fasta sequence used for the hla allele called.
For instance, if optitype called `A*01:01` I would need to know its fasta sequence, which would…
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Hi, I want to do some benchmark HLA typing methods, I found out that Illumina Platinum Genomes is a common source of solid validation. However, I haven't found the truth set of HLA allele, I have sear…
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_Issue [HLA-1284](https://jira.stsci.edu/browse/HLA-1284) was created on JIRA by [Rick White](https://jira.stsci.edu/secure/ViewProfile.jspa?name=rlw):_
Unused pixels that are filled with zeros are…
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Thank u for creating this amazing tool! I have two questions.
1. How does HLA-TAPAS deal with the multiallele situation in logistic regression model(HLA alleles,two field)?
2. If I impute HLA region…
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Hello,
Please, I am trying to annotate my cells using the GSEA function with I list I generated myself as seen below, but it is throwing errors:
Error in gset[[celltype]]$character :
$ operator i…