-
Updates in #451 have fixed things here BUT we need to sweep through already-uploaded datasets and correct the type of this column.
_Originally posted by @jorvis in https://github.com/IGS/gE…
-
When running the single cell RNA seq course last week. We found that the command:
`srat
-
The Phenograph option in utility.init_clustering() currently uses the Louvain algorithm (which is the default setting) and has no option for adjusting the number of clusters. Generally, the Leiden alg…
-
These features goes up to igraph 1.5.1
- [x] `largest_component()`
- [ ] `ivs()`, `largest_ivs()`, `maximal_ivs()`, `ivs_size()`
- [ ] weighted cliques
- [ ] Pertaining to above, find a way to w…
-
Hi,
I'm trying to use `diffxpy` with an AnnData object that has been clustered using the Leiden algorithm.
When I run the following command:
`wilcox_test = de.test.wilcoxon(data = batches_…
-
While working on a project, I found this package called [`leidenalg`](https://leidenalg.readthedocs.io/en/latest/index.html). Based on my experience, it produces higher quality communities than Networ…
-
## DaggerGraphs
- https://github.com/JuliaParallel/Dagger.jl/pull/448
- Huge graphs with partitioned structure and metadata
- Merge is close thanks to @jpsamaroo
- Order of magnitude: hundreds o…
-
@vtraag
Environment: Windows. v0.9.2.
The plugin works fine when I haven't applied any filters. If I apply a filter and run it it stops immediately, there is no popup window, and I see `Leiden a…
-
We should do this sooner than expected, because it's a dependency for the Microbiome Paper.
- [ ] https://github.com/VEuPathDB/plot.data/issues/239
- [ ] make a function to get a node's neighbors
…
-
**From:** Maxime Moog
**Email:** maxime.moog@tuni.fi
**Server IP:** 10.142.0.14
**Msg:** Hello, I have been trying to use your platform to analyze some data and no matter my characteristics or the …