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The supplementary of https://www.nature.com/articles/s41586-021-03451-0 describes a script which can calculate the % of false duplications in the genome from the Merqury spectra-cn output: https://git…
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Hi everyone,
I have some issues running the pipeline in a 600mb genome and I would like to know if someone could help me. Here is my log with the error that I ran into.
Opening outputs:
'-'
…
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Hey Dengfeng,
First let me say thanks for developing purge_dups! It's a great piece of software that seems to really do it's job successfully.
We've been working on purging a Falcon-Unzip assemble…
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I installed Merqury (v1.3) through conda. After running merqury under conda environment:
`merqury.sh $WD/Carex_hic.meryl $REF Carex_pctg`
I got the most expected outputs such as qv, completeness, an…
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I have PACBIO SMRT Sequel data - and both Hi-C and Chicago Illumina data - but no standard PE or matepair Illumina data. Would you recommend using NextPolish with just the PacBio data - or would it b…
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HI Arang,
One question I have is that I used hifi data on well assembled T2T genomes to predict QV and found in QV between 53-56(Completeness:93). And I found other genomes that are not T2T, some p…
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Hi,
I successfully assembled an _A. thaliana_ genome for which I obtained two partially phased haplotypes of size 148.1 Mb (hap1) and 146.4 Mb (hap2), respectively. These files are in **.fasta** f…
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Hello,
I'm very excited to test and assess the quality of our phased assembly (FALCON-Unzip -> FALCON-Phase).
However due to the nature of our system we are unable to acquire the parents of our sequ…
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Create a galaxy wrapper for [fastk](https://github.com/thegenemyers/FASTK)
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**Which tool should be included?**
https://github.com/marbl/verkko
https://www.biorxiv.org/content/10.1101/2022.06.24.497523v1
**How is it used?**
```bash
verkko -d --hifi [--nano ]
```…