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I’m looking for gene prediction alternatives to MetaEuk that are less resource intensive for my VEBA software suite (https://github.com/jolespin/veba). With a cursory glance at the repo, it looks lik…
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Dear authors/maintainers,
First off, thank you for developing and maintaining this wonderful tool! Your efforts are much appreciated.
I would like to inquire about an issue I am facing. Specifi…
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Hello developers,
Thank you for the tool.
I am working on shotgun ONT metagenomics data and came across your tool and bioarxiv paper.
I ran lemur but i am struggling to find information on ma…
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**Supervisor:** Bérénice Batut
**For degree:** Bachelor
**Status:** Open
**Keywords:** Metagenomics, microbiome, data analysis, training
# Global context
Emerging and powerful technologies li…
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**Metaxa2**: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data
https://microbiology.se/software/metaxa2/
[doi:10.1111/1755-0998.12399](https:…
vmikk updated
3 months ago
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Dear Sir or Madam, I appreciate your significant contribution in decontaminating the sequencing data.
I haven't used decontam yet, but I think most of the examples were researched based on ASV/OTU re…
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Hello,
I am trying to download some HMP transcriptomic data, and the links provided in my manifest are giving me some trouble. I have tried downloading from other manifests, such as the example htt…
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Hi!
Thanks for developing the tool and the RUST extension. I have a viral metagenomic dataset with 100 samples. I assembled viral contigs from each sample, and clustered the contigs into vOTUs usi…
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I am trying to run jellyfish on paired end fq files with this code `jellyfish count -m 31 -s 5G -t 6 -C /Infant_Metagenomic-Data/Data/Clean_Reads/FCHLCGNBBXX_L3_wHAXPI058873-95_1.fq /Infant_Metagenomi…
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Spades finished abnormally while running through the assembly part in the conda environment.
Not sure whether is a RAM issue but at spades (```https://github.com/ablab/spades/issues/472```) they adv…