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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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- in the previous analysis, only minikraken database was used for computational purpose
- however, for the accuracy of the evaluation, both **standard database for kraken2** and a **custom database b…
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Hello!
I got MetaCerberus to work, I'm using the third (annotation) part of the pipeline, inputting combined prokaryotic, eukaryotic and viral gene predictions predicted with different programmes. …
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The current `Dataset` has type and subtype which is slightly problematic. `Type` is really indicating the row format used in the DwC-A and causes problems since a checklist can have occurrences, and a…
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Hell Dashing2 developer,
Dashing can be use for genome derelication in nt format but I am wondering wither it is an option to have it also work for amino acid sequences (all gene of a genome in ami…
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In the [manual section on the confidence score](https://github.com/DerrickWood/kraken2/wiki/Manual#confidence-scoring), it is stated that
> we have developed a simple scoring scheme that has yielde…
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This is the error message if `partition=milan` is used in the slurm script:
```
Can't locate LWP/Simple.pm in @INC (you may need to install the LWP::Simple module) (@INC contains: /usr/local/lib64…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mkbwang/ADAPT
Confirm the following by editing ea…
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Goal: compare the performance (in terms of accuracy, speed, and RAM usage) of the MinDivLP approach, and a standard QIIME2 workflow.
- [x] Familiarize yourself with [QIIME2](https://qiime2.org/) an…
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The metaphlan pipeline is providing only the relative abundance assay, and not counts. This is sometimes inconvenient for various standard metagenomic analysis methods and workflows that expect counts…