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### Description of feature
https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1
FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGA…
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### Description of the bug
Hi all - long time listener first time caller:
I have a rather large set of Illumina data along with some nanopore reads on which I was trying to run the hybrid assembly o…
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Hi,
I would like to extract plant mitochondrial reads from the whole genome Oxford Nanopore? Do you have any idea which software-related for this? Like GetOrganelle for Illumina reads.
Thank you.
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Thanks for developing Strainy!
I'm trying to use amplicon-based Nanopore reads to figure out strain abundances in bacterial samples. The pool has 740 strains and each sample may contain ~10 of them. …
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Please, explain what read length should I use when running bracken on long read sequencing data
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In my assembler `shovill` i estimate the genome size from kmer frequencies and use that to subsample the reads to a fixed coverage (100x) much like rasusa does:
https://github.com/tseemann/shovill/…
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Disable length trimming based on quality for NanoPore reads. NanoPore quality scores do not follow PHRED scores.
```
@2b89169b-74c9-4653-8877-c3f21ec7674d runid=2564fad3a9906330fcc0c6c90ac0c8128b8…
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Can AlignGraph2 support nanopore reads?
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Hi! We have sequenced some isolates of _Candida auris_ and would like to perform de novo assembly. May we ask is it possible to add support for Nanopore reads?
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Please describe the issue:
When running Dorado demux with default settings (without the --emit-fastq flag), the process gets stuck after processing approximately 7000 reads(Tried with multiple datase…