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Dear developers,
Many thanks for such a great tool!
I have 32 fastq files sequenced from direct cDNA sequencing by nanopore, and compressed them into a fastq.gz file.
When running the rattle cluste…
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It is clear that eventalign-dependent modules does not support R10.4, but it looks like polya uses non-eventaligned durations. Does this mean that polya should be fine to run on R10.4 data, or should …
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Hello,
I am planning to dig deep in my nanopore shotgun data and figure out how i can make better analysis.
Currently, with default parameters the results are not bad as such but the proportion …
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Dear developers:
openDBA has many applications, which are very interesting. Nanopore provides a kmer model for generating standard nanopore signals. By providing a sequence based on this kmer model, …
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Base calling, is the systematic assignment of nucleobases to chromatogram peaks in case of electrophoresis, current changes resulting from nucleotides passing through a nanopore in case of Nanopore se…
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Hi,
Does the capTEs suitable for nanopore direct rna sequencing data?
Thanks,
Bai
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I suggest using the poreCov pipeline as the backend for SARS-CoV-2 wastewater lineage deconvolution from nanopore long reads. You already added `freyja` ( #274 #270), which is great as the current com…
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Hi,
We are trying to analyse variants in the data obtained from oxford nanopore can we use MToolBox to analyse such data, is long read sequencing data supported by MToolBox?
Thanks and regards,…
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…
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The genome size of the species I'm assembling is 2.6Gb, and the ONT data comes from dorado sup v5.0.0 (R10).
When I used 167GB data (>Q7, >10Kb) with "Nanopore-UL-May2022.conf", I got an assembly o…