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Now that `INDEX:DOWNLOAD_BLAST_DB` reads from AWS, the biggest bottleneck in the index workflow is `INDEX:MAKE_HUMAN_VIRUS_DB:GET_HV_DESCENDENTS`. This relies on the NCBI script `gimme_taxa.py`, which…
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Hello,
Just a quick query on adapter dectection, there is smrtbell adapter which keep poping up in our dataset, and looking blasting it at ncbi, not only ours.
I would be nice if it was possibl…
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Hello, some dfast dependencies are docuemented here: [software-distribution](https://github.com/nigyta/dfast_core?tab=readme-ov-file#software-distribution).
but while looking at Dockerfile, and
o…
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This additional function is lower priority and should be dealt with after issues #20 and #21.
One additional functionality TaxI3 should offer is to compare a set of sequences (from the input file)…
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Why is the nt dataset downloaded from this link https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/ larger [378GB] compared to the one downloaded using the command `update_blastdb.pl --decompress nt` [151GB]…
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Hi, I got an issue installing H-blast:
```
Do you want to install H-BLAST [yes/no]
yes: will download and install "ncbi-blast-2.2.28+-src",
and then install H-BLAST executable files to
/be…
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Hi there!
I have tried multiple ways including running the docker version of blast and every time I am not able to complete the blast run. It probably is something I am doing differently, but I am …
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### Context
The `NCBIWWW` module contains functions that aid querying NCBI's native BLAST server and its associated services.
During my own usage of this tool, I found myself waiting "_long_" re…
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Hello how are you!
I'm trying to use the NCBI Magic-BLAST tool RNA-seq mapping tool, but I'm not getting it.
I followed the tutorial available on NCBI (https://ncbi.github.io/magicblast/cook/sra…
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Hi, I am trying to download a docker image of finder but encountered a error, here is the error information:
```
=> ERROR [44/53] RUN mkdir -p /softwares/NCBIBLAST && cd /softwares/NCBIBLAST &…