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readSpatialOverlay() throws me an error for one of the TIFFs while another TIFF I was successfully called in R.
Do you have any idea how to fix the issue? (I am not familiar with TIFF files and any …
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Better error handling would be nice to have.
```r
> loadImages("IMC_oSCC_Angela2024/", "tiff", single_channel = TRUE, on_disk = TRUE, h5FilesPath = getHDF5DumpDir())
Error in normalizeDoubleBrack…
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Hi Folks,
I am new to this and would like to try to test and see if this workflow would work for stitching + align + fusing a large multipoint Nikon .nd2 file. My datasets are multipoint acquisition…
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ATM I believe we are just testing if we can open them and two custom checks (not an empty group and not too deep of hierarchy). [Initial validate support, with --strict option](https://github.com/om…
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Hi, I gather that ome-zarr is able to handle N5 files (via https://zarr.readthedocs.io/en/stable/api/n5.html). Some of our workflows are currently using a mix of N5 and ome-zarr (e.g. from MoBIE proje…
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The spec: https://github.com/ome/ngff
A python library: https://github.com/ome/ome-zarr-py
A viewer: https://github.com/hms-dbmi/vizarr
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Hi,
valis-wsi is wonderful! Thank you very much for providing the community with this extremely useful tool.
Unfortunately, we are experiencing problems when trying to read a `.qptiff` file wit…
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A part inspired from
- #1281
and current problem of presumably having LOTS of non-compliant zarrs in the archive:
- https://github.com/dandisets/000108/issues/14
For any .zarr we encounter we s…
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Hi,
I've been using OMETIFF with Images to read in some ome.tiff files. I initially had been using v0.3.5 which was correctly reading my files in. However, I recently updated to v0.4.5 which seems …
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Hello,
The dependency solver seems to go on an infinite loop when trying to add `ome-zarr` to a poetry project.
Can be reproduced even with just ome-zarr as the only dependency:
```
alik@AFI…