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For checking:
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PMID:1482118 | Genetics of the fission yeast Schizosaccharomyces pombe.
PMID:7011176 | Genetics of the fission yeast Schizosaccharomyces pombe.
PMID:9439701 | Identif…
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Hi! This is a great package with many useful resources!
After looking into it, we were wondering if it can also be used to model cellular communication. More precisely, we would like to extend INDRA…
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I have just read the paper cited at the end, and it convinced me about the potential of monolinks as a source of experimental information regarding surface accessibility. As suggested there, this may …
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Just want to express my gratitude! And congrats on winning Nobel Prize in chemistry! Love AlphaFold work! Thank you for everything! Thank you for open-source the codes!
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Background
Protein quality assessment (QA) useful for ranking and selecting protein models has long been viewed as one of the major challenges for protein tertiary structure prediction. Especially, e…
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Hey,
I would propose extend list of available models by [SeqVec](https://github.com/Rostlab/SeqVec) (ELMo-based implementation) which was presented in the [Modeling aspects of the language of life …
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I've been exploring multi-resolution methods (such as ONIOM and QM/MM) to couple atomic-level details to large biomolecular constructs.
What I'd like to explore is how to unite these models, from bot…
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I really like the IDPConformerGenerator to explore possible protein conformations. Some of my PDB structures contain DNA which I remove beforehand from the pdb file in order to start the building pro…
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@lnaden:
It would be useful to distinguish between unsolvated models in the "Models" section that is associated with each Structure, as well as on the Models page. For example:
![image](https://us…
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add the protein interaction data from wormbase.
note that these encompass genetic and physical interactions, as well as group-wise interactions in complexes, which requires a bit of modeling.
the …