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I'm trying to run Krona through Cygwin. The installation went fine, as did `./updateAccessions.sh.` But, when trying to run `./updateTaxonomy.sh` I get the following error:
```
$ ./updateTaxonomy…
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Hi!
I'm interested in your work and I'm trying to reproduce the results on the data you released, but I'm having some problems.
1, The released sequence data contains `taxid`, and I used NCBI to …
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Dear Dr. Lind,
I'm generating a custom eukdetect db and I'm stucked at get_uncomputed_taxid_per_busco.py. It fails with the following message:
"""
python /home/qi47rin/proj/00-git/EukD…
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I was trying to build a database using the taxonomy files from [gtdb-taxdump](https://github.com/shenwei356/gtdb-taxdump), however it failed when reading the names.dmp with the following message:
```…
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Hi! I am using blobtools 1.1.1 installed with miniconda. I followed the instructions to install the nodesdb and no file is generated using blobtools nodesdb. Any idea what I am doing wrong?
Thank…
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Hi,
I'm trying to specify the custom path for the `taxdump.tar.gz` file. The file successfully downloads to the path I specify, however I get an error when ete3 tries to open the file (The file doe…
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I tried to download the "viral neighbors" database (as well as RefSeq) using the code below.
krakenuniq-download --db DBDIR refseq/viral/Any viral-neighbors
Unfortunately, we run into the follo…
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I got an error message for the run_blobtools_create rule of the pipeline while all the other steps went apparently well.
Do you know what is happening here ?
I tried to run the command interactively…
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When you create a taxdump using `create-taxdump` (ICTV taxonomy, for example), the taxids "skip" some numbers. For example:
```
$ head ictv-taxdump/names.dmp
1 | root | | scientific name |
2872…
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### Description of feature
See comment by possible 'user' expectation as commented here: https://github.com/nf-core/createtaxdb/pull/14#issuecomment-1874166674 by @Midnighter